Scaffold Ga0068471_1398312

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1398312
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1976
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (50.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae → unclassified Flavobacteriaceae → Flavobacteriaceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F000937	Metagenome	828	Y
F016594	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_13983121	F000563	N/A	MRYKFKVYEEGKEIEDKEAMSFKKLLKSLITPNPKWTGWIAYQNKKDKYVRHSILNGKRK
Ga0068471_13983123	F000937	N/A	MVKEIVLIILLFNGELKLTPLPFEGTVHECFAHGNQLRIEHATYNEEQNAWYMNDGSGTWQGFICE*
Ga0068471_13983124	F016594	N/A	MIKFILFMWLCSGVANDCQRIVVPYTTFDSYRDCSLYGYEHTLTILNNMPEEELEKWQIHTRFACTEEKTI*