Scaffold Ga0068471_1384019

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1384019
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2381
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004843	Metagenome	421	Y
F005464	Metagenome / Metatranscriptome	400	Y
F027016	Metagenome / Metatranscriptome	196	Y
F101872	Metagenome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_13840192	F027016	N/A	MEELEEAEAEALLLNREMLTEVKNLIDDINGITPPQHLKQFIHSQWGSILGSEEDIRLATLKDEVEIWEQRVGKNPDTIPYLGYIRDTLKGRIKELTKGL*
Ga0068471_13840193	F005464	AGGA	MNIRNKDNTLRMAGWTLSLLCMVIGSYFVWPHIHVALLGLAFFYLALRIFNFSTFEEYKEDRVKLLLKLSKW*
Ga0068471_13840194	F004843	N/A	MKRLDKALKKWMFMMIIVVALGLNGCADTADAETSAAISPVENQEETTTTSSSETIWIAIIMTWRPVIYTIDKEFSSELDCWNYYDNGVGESKMLNNYGTQVLDHQGNKPGKEFHKKHRPPHREYPIRLYHGINVEQGQVWLTCDIKGRNEGL*
Ga0068471_13840195	F101872	GAG	MDTLKQIIQDIKVSNSLQGQANIGSLANSFRLSEEDIRILTFASKPIKENVKHEELQFDQNVFKKPSIYETLG*