Scaffold Ga0068471_1361725

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1361725
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2993
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012921	Metagenome / Metatranscriptome	276	Y
F013815	Metagenome / Metatranscriptome	268	Y
F023622	Metagenome / Metatranscriptome	209	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_13617252	F013815	GGAG	MYFVQYEKTLPPWYSGIDKIEAETSEDAVKEFYKHHDSFEERVRSVREVQSTYQKQIM*
Ga0068471_13617253	F012921	AGG	MADEFDFGFSAVSTEEFSKTQTVTEAQPSAASSEEFDELKKKLDSISSLIQTLGDREDTSLFDETGEIVAANGEKISRVEDKIDKILAMESSQVASALEEQGSSIRAVIDEVEERKGELNEKFSGKLKELEVWLFRC*
Ga0068471_13617255	F023622	GAGG	MKTFKEFKEKSPTLIAEQVYFKVSIPDLSPMFMKASSESAVKLDMRMKLKPDVVKEISIKRVTKSEMRKIYRAMGQGKEVEPDEKENEKEEK*