Scaffold Ga0068471_1355747

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1355747
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4662
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002745	Metagenome	533	Y
F013815	Metagenome / Metatranscriptome	268	Y
F023622	Metagenome / Metatranscriptome	209	Y
F072442	Metagenome / Metatranscriptome	121	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_13557473	F002745	N/A	MIRFKQYLREFAVQSTSDYVFDTTSGNSSSLKIPISGPMFKRIWPDTIRATVFHTTSLEGLEGIKKLEGGKKSISAFFSMFARYMETGVASGGDIHVVVEMDADVLVSARDDIWSQVDKTGRRWVELSWFANAQLGRTGPEFGKVEKDLNTLITNLVKKHLTPILGKNAVVREHEYELWSNMKSHLKAGREGGGNRLRLVIKDYFDGIEQVLKKNKKVMGNIIYGYTKSKRMTDNAWDEQIVNNIKVKTIHIWPDKPGVWSQTEDEIKQQITDIKKWPIKEWDTTMDLEIYTREVVKKEIGK*
Ga0068471_13557474	F072442	AGGA	MKTFKEFFQLGVTKPSKFDVQNYLNHLGTRLMQLPDKIRTIEKHFKNNKKLKLDRSGKKVLSFEEHIPEEITKRDIKKNK*
Ga0068471_13557475	F013815	GGAG	MYFIQYEKTLPPWYFGTDKVQAETSEDAVKEFYKHHDSFEDRIQSVRKVQDTYQK*
Ga0068471_13557477	F023622	GAGG	MKTFKEFQGKPPTQIVEQVYFKVSIPDMSAMFMKASSESAVKLDMRMKLKPDVVKEVSIERVTKAEMRKIYRDMAKGKEEEPKEKE*