Scaffold Ga0068471_1297440

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1297440
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1789
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026591	Metagenome / Metatranscriptome	197	N
F031895	Metagenome	181	Y
F038856	Metagenome / Metatranscriptome	165	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_12974405	F038856	AGGA	MQNKVEKKDWKVTLSYDVRHDDTYLITNQTEKDAIYIAENQNQSSKCICIKEDEEDIEDVDTTIKEVVFNGEKKDWLPKEVK*
Ga0068471_12974406	F026591	AGGAGG	MGWDDWTSKFNFEEKPDTDEKDVGLKEFEVEEDIVFTVKYKVLAKDKSDLIDKKVYLGGASLEIDKDGDDVGKTYDYYVKNWGTENTKETETGRAVIKEYGKDDEGKEDKEDFEIKLGD*
Ga0068471_12974407	F031895	AGG	MSCLINEEIMERLYEDFLEILTKDNKLPLEQREKKAALLAKEEFWNG*