Basic Information | |
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Taxon OID | 3300006310 Open in IMG/M |
Scaffold ID | Ga0068471_1292453 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2095 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F025390 | Metagenome / Metatranscriptome | 202 | N |
F026127 | Metagenome / Metatranscriptome | 199 | Y |
F047120 | Metagenome / Metatranscriptome | 150 | N |
Protein ID | Family | RBS | Sequence |
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Ga0068471_12924532 | F025390 | AGGAG | MTTHFNNGVTNVVKDKSPLKNAMMPDPFPVTNTQGGGYDFLGQTSFMDDFYSLITRTNTSNNGRGSPGWYLSQTASTQTCAPIADAVGGWAQLDEVNATNDAYNQVNTFTAFQLSTSMNSGFEARVAVEDISATEIVFGYVDTDVTSGVVNITDGLYFSNFSDPDSITAGTGLYLHCEKNGTITSSDALVDPYTGDTFVIEDGSLQAASATQLATPSNSFIFGFNIVPKGSNGNVNTAVIQAYLGPVGKQPLPAGSIATTNLPDDLALGLMMGTKNNTTTAAIMWVDYVKAISSRSFGSSTTK* |
Ga0068471_12924533 | F047120 | GAG | MTSPFNTGDNMFDVKTKQLTASGQVTTKVSAGSNTLSAPARVLGLTVQCGATEGKIDLVDDGASGTVKFTQVTPAIKAGAGDMLQFDFPEMGLKFDTDLYVYFNHATKVNVIYG* |
Ga0068471_12924534 | F026127 | GGAGG | MFSLAIISALNIMGCSIYEGMSMKPHKTSVTTTYGLDEIDKANDSKDQTKDSMQITVKQEFLWKE* |
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