Scaffold Ga0068471_1287525

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1287525
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1690
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000782	Metagenome	894	Y
F001136	Metagenome / Metatranscriptome	767	Y
F061917	Metagenome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_12875251	F001136	AGTAGG	MVVDDTITQALNRIAENQEELNDTLKRILGHYDSVVPVMKRNADRSEDIAKAQEEGFAQGFKNIFKPVEN*
Ga0068471_12875252	F000782	AGGAG	MTKQDFRNRVKGLFSVRWIKNDGTEGYIHRGILGLTKHIDGEHKEHDNYVLVYKVGNGYDEGRKWANVNPNTITEINSYTQ*
Ga0068471_12875253	F061917	AGGAG	MTNEMTTTKQTSISNVDISSVINEVIEYTKDQATISDVKSLLASVPKSDSMDWKLVSGVIMNSLV