Scaffold Ga0068471_1272900

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1272900
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1793
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (42.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001048	Metagenome / Metatranscriptome	793	Y
F007052	Metagenome / Metatranscriptome	359	Y
F012919	Metagenome	276	Y
F038414	Metagenome	166	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_12729001	F038414	N/A	MSNIMTEEQRDNTINELYKKRTSPKTIQIQDSKTSRSKAEWLHISTSGVDGEGQGTYDVGRRAMKRERLADKKLRAKQAKAA*
Ga0068471_12729002	F012919	N/A	MEYIMKISRKKLNLEIDKYLKNGGKITKLPDGPDYRFQPYGVRVPPGDPKVDLTISDTPTTKQQISYVEKNSL*
Ga0068471_12729004	F007052	GAG	MKKNETYFVAKLINKGKFLSSEIFESLEEARLWAMKEAKLLISDMEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSTRVL*
Ga0068471_12729005	F001048	GAG	MKIVSTKQFWWRFNHLKRNGAEITVTDRTRPFDLKEWNRIESLVNKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIL*