Scaffold Ga0068471_1242444

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068471_1242444

Scaffold Ga0068471_1242444

Overview

Basic Information
Taxon OID	3300006310 Open in IMG/M
Scaffold ID	Ga0068471_1242444 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5557
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001493	Metagenome	683	Y
F001930	Metagenome	615	Y
F005610	Metagenome / Metatranscriptome	395	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_12424444	F005610	GGAG	VVHKMKTFKQYLTEADSEEVRDAKKVFTSLQGMYPKLPKFSLVFKNLKGKGSGYLETSKLKGGKVIFVDKMVIDDSGMSSFEPDYAVVHEFAHAILAITKGDLGHNKRHADLTYKLAQKFGLA*
Ga0068471_12424446	F001930	GAG	MKTFKQYLKEGVAWELSASKMIFDFGQMSNMKIPFTSKTMEWIFQVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMSADYIDSGIKTEGGVVAELDANIIVSSKSDIMSQPDKTGRRWVELYNIDPKEKMHKEFEKMVIDLAVKHDPRNKEYLKTSPEIGLGVWWKLQSDLQTNFAKDKAGKKLSLIIADYIDGVNAILKKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSELSEWNAWDEQVVDKIKIEKVHTYNTARRSGDWVKTDIIPNLGKIPHKHWKSTKELSTYISQVADAEVRVLRRSKG*
Ga0068471_12424447	F001493	AGAAG	MKSFKQYLKEGPPAWTESLSTMLFDLPREGLKDLKIPLSPAIFKRIWPESVRSRVFHLTDLDGVGKLKKMQGKKKSISAFYNIEDYILQGGIKTDGGYVVELEGDVLAAAPDDVSSQPDKTGRRWITFSSLMNPSTASDPGLGGGSKLKGIEKDLEKLLVEILVKNGLGPYKKGLTTRELNRGWSYLGKSTGGKEKSIIIKDYIDGMEKIMKKYSKPLKSVFTDYAFDKELVPDPDSGEKAMWDEIVVNNFKIKKIHVTEEFGEDWQEDDDIEGFPFELYPNGNGDLIDYIARTKNS*

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