Scaffold Ga0068471

Basic Information
Taxon OID	3300006310 Open in IMG/M
Scaffold ID	Ga0068471_1223011 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006310 Open in IMG/M

Scaffold ID

Ga0068471_1223011 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	9851
Total Scaffold Genes	19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	11 (57.89%)
Novel Protein Genes	5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (60.00%)
Associated Families	5

Scaffold Components

Scaffold Length (bps)

9851

Total Scaffold Genes

19 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

11 (57.89%)

Novel Protein Genes

5 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (60.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	500
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

500

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000245	Metagenome / Metatranscriptome	1468	Y
F001930	Metagenome	615	Y
F006364	Metagenome / Metatranscriptome	375	Y
F007608	Metagenome / Metatranscriptome	348	Y
F012070	Metagenome	284	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_122301113	F012070	AGG	MPIDVKINEDDYILYEILCDYCDEEYVIKYKMKDEMPKQSIECCPFCSNLIEEPAESIIHDEETGWD*
Ga0068471_122301116	F006364	AGGAG	MELEIDNDTRKMRIINYLDYMDDKSLQEIAAALYNLSVRRREVKNRKEMIDESGK*
Ga0068471_122301117	F007608	AGGAG	MSQENKYEKLPNSMYPKVRQQVTDRIATFEKVIEDHETAQKEALKVIYEQLEEAKNDLKYLDEVN*
Ga0068471_12230113	F000245	N/A	MKTFKEYRLDRKLDKYVSDEIKKRKLAKHPVNATDDIKMRMKPNKPVFKFPTPTGSMMIHVYLRKMAPPASKDTMAFNYQLEDK*
Ga0068471_12230116	F001930	N/A	MKRFKTYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVAELDANIIISSKSDIMSQPDKTGRRWVALYNIDPKYKMEKEMTQMLIDLAVKHDPRNKEYLKTSPEIGVGVWWKLQTDLQTNFAKDKAGKKMALIIADYIDGVNVILNKHKKEIQGAVHGYYVRRGTIAVKHASGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTYNTARREADWVKTDIIPRLGRIPHKHWKSTTELSTYISQVADAEVRTFGGWARKK*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068471_1223011

Overview

Ecosystem & Geography

Associated Families

Sequences