Scaffold Ga0068471_1220051

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1220051
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2259
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005148	Metagenome / Metatranscriptome	410	Y
F008755	Metagenome / Metatranscriptome	328	Y
F009404	Metagenome / Metatranscriptome	318	Y
F015879	Metagenome	251	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_12200511	F008755	GGAG	MNKSRVARDLWRKVFNDNLINLSDGDARKQVVRDFLNDPVNKKSGWKSKDARFFRLGFQKVAKENNFNVMNVGVTPTPSRSKTNKGSMNINVKSKQKNPPPMGEQLKKPEEVKGLGALPTTPQLEQQQAQAVQYSAQSVGQIFETIFNIFSSRFGCSPLSQNERIALGESWSPIFNEYFSGHSI
Ga0068471_12200512	F009404	AGGAG	MSDEPETIQPKGESLVKHCPICGVEFDETVLTNRWLKCDSCETIFQVKVKTGE*
Ga0068471_12200513	F005148	GGAG	MKQKKYEEYLKRNLPESEEVECKNCGLKFHDDFNLICLSALDMCLLCANRNLDKETIKEKYHE*
Ga0068471_12200516	F015879	GAGG	MKKDDVIIITCNVCGAMSHAIKTKIPKGYYLKDEFVLCKICFGDLK*