Scaffold Ga0068471_1191339

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1191339
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2932
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (85.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F026709	Metagenome	197	N
F043453	Metagenome	156	N
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_119133912	F096041	AGGAGG	MNKNKEYIYITRTMKINVPAIYCQDAIDKIELMKKKDLIPKELGFLYTRCRVRDRGRDKYGL*
Ga0068471_119133913	F013700	GAG	MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMADGGMVRQEFLRRIAQIGYDELKFQDIADTLENDVDENNSHLVSKYYEPPETNEDDE*
Ga0068471_11913394	F043453	AGGAGG	MSEQIKIVVDRQNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLSKQFDINLKEQKNIWKE*
Ga0068471_11913397	F026709	GGA	MYIILIKDNHRYRIYTNEIFTLEDEALDYAKRSKFKKNVKWKVEEYDKKYFKS*