Scaffold Ga0068471_1177164

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1177164
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3999
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015611	Metagenome / Metatranscriptome	253	Y
F027651	Metagenome / Metatranscriptome	194	Y
F047304	Metagenome / Metatranscriptome	150	Y
F062152	Metagenome / Metatranscriptome	131	Y
F105352	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_11771641	F015611	AGGA	METTYKEFMEAKLKSWKDMKDRNVLKAAEKFKKKMKSGNVLGYTQAHGEFTIFRNEKEWNDSVKHGKDMQWLRVE*
Ga0068471_117716410	F027651	N/A	MKIKNLVQKQLKWEVVGLANAVNKNYHGWLSCVTDKKEYCVESDKFGHGFGVFSGPKYYRIEASQKSGCNGIIDQKNSKMFSAAHKENHVWGFVVKADSVNHNRGDILTRNYEKVGNVLNGNTANLGMPNSHYPNYTDCWAGADIW*
Ga0068471_11771644	F047304	GAGG	MEIKAQNWGAVITKNMVTEKELKRIKKEGGFVKGKTRKAQGSKNARWGQCE*
Ga0068471_11771647	F062152	GAGG	MGPHYTNELINHINKLNEETRARGAVGFLTNDPDHWAGYGVFNIGQFQDYLEREYQHNMRKEERRNY*
Ga0068471_11771648	F105352	AGG	MSYCGKIRKDKENSYKLEIPRNQFDRIADAFEHQVIDVNGYDVDKDTVIFTVSEKQRLWFEKIAKSKNIKWKGKVKVNPYYWITEMFLLNNIQKHLVK*