Scaffold Ga0068471_1170990

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1170990
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2874
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000942	Metagenome / Metatranscriptome	826	Y
F001048	Metagenome / Metatranscriptome	793	Y
F013649	Metagenome	269	Y
F022974	Metagenome / Metatranscriptome	212	Y
F030785	Metagenome / Metatranscriptome	184	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_11709903	F000942	AGGAG	MSSNPYELRFDLLSMAQGYLQDKQEQDKDFAYQAWDLAREDGKANMELWKELQPDSYSIEDIKNKATELYEFVEQK*
Ga0068471_11709904	F013649	N/A	MSFSDRLSILERLPVHQRMTARDNAGKKRTKKTKRKHYEEHYRKDWDKDLWD*
Ga0068471_11709906	F030785	AGGA	MKTATVEILEKDEKIFGSRTNGEYMVRRYEDGIEMGGEFHYTLTEAGAAVRKWENQTEK*
Ga0068471_11709907	F001048	GAGG	LKIVSTKQFWWRFNHLKRNGAEITVTDRTRPFDLKEWNRIESLVNKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIL*
Ga0068471_11709908	F022974	GAG	MEKNETYFVARLIKKGEFLSSDIFETLEAARLWAMKETKLLVSDSFLRKCKADDVVVEIDKHFFGYEISSEELLKNSVRVS*