NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0068471_1167126

Scaffold Ga0068471_1167126


Overview

Basic Information
Taxon OID3300006310 Open in IMG/M
Scaffold IDGa0068471_1167126 Open in IMG/M
Source Dataset NameMarine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterUniversity of Hawaii
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3620
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Woesearchaeota → Candidatus Woesearchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location NamePacific Ocean
CoordinatesLat. (o)22.75Long. (o)-158.0Alt. (m)Depth (m)500
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010325Metagenome / Metatranscriptome305Y
F013774Metagenome / Metatranscriptome268Y
F029469Metagenome / Metatranscriptome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0068471_11671266F010325AGGAMLRKELVSDKLDQLQLAVDRLKSSLVVPTDPGDVGTPTEVIIQQLQQIENQIDQIVNLIELEED*
Ga0068471_11671268F013774AGGLNDKLLELKRKKLQRQILYLRTELEETTFIFQDCLIEFEGEFRDYFKNQSNKDHKKVTTDPPEFDIPEKDVNTVFRMIAQKTHPDKLIKEDTLSSTYKEKVDMYKEALGSVENKDWSRVIEIAMELGIDVSDVKNDDSDYLNESIKALTEKTKELKSTYAWIWYHAENKENIKQMILQSLGLNKEKENGK*
Ga0068471_11671269F029469N/AMSNKPEHTSYFEEIIRRLKEMEVEFNKAPKQPDDEIYGEMDGKIELLELPFPPEMFDRLSSDEKETLFIWLNRRNMPQA*

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