Scaffold Ga0068471_1152987

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1152987
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5781
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F031532	Metagenome	182	N
F053341	Metagenome / Metatranscriptome	141	Y
F076180	Metagenome	118	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_115298711	F076180	N/A	MIKYTLIIFLFANLDTYIGNFYTIKQKFNTYHECKEYVEQHTADSITGFGQVFTPSAHPPIFQGRIIGLTYCKPIDIQ*
Ga0068471_11529872	F031532	AGGAG	MSHRITKKKIKTFLSLRFRKEPLMMYDDTLDVAIEVIQDFLNCDPLDVGRLQGNTYNTIYNIEKEIDNE*
Ga0068471_11529875	F053341	AGGAG	MKTLNKDTHYLKEHTDSGQKDLAKAVLLRAFLDSVGHIGSHGSVGKSEMGMLQDQAKNFINPNKKQFKLVCELADAEPEYVSKIHDDLTYHYNCGKLKNLNTKYIIERLLAKL*