Scaffold Ga0068471_1146890

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1146890
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5870
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 9 (47.37%)
• Novel Protein Genes: 11
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (45.45%)
• Associated Families: 11

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000615	Metagenome / Metatranscriptome	984	Y
F001048	Metagenome / Metatranscriptome	793	Y
F002874	Metagenome / Metatranscriptome	524	Y
F004768	Metagenome / Metatranscriptome	424	Y
F007052	Metagenome / Metatranscriptome	359	Y
F007055	Metagenome / Metatranscriptome	359	Y
F008625	Metagenome / Metatranscriptome	330	Y
F012919	Metagenome	276	Y
F020372	Metagenome / Metatranscriptome	224	Y
F030563	Metagenome	185	Y
F058211	Metagenome / Metatranscriptome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_114689010	F000615	GAGG	MCRLRLFYECSDGAMGFAEHVMRYEDDIVSFIKHWKTGGRMVITEHIDLV*
Ga0068471_114689011	F001048	N/A	MKIVSTKQFWWRFNYLKRNGGEITVTDRTSEMDVKEFNRIESLVNKRVRWELGSEGYSIWSECGYKDIPTLAKAYRIS*
Ga0068471_114689012	F004768	N/A	MKTATIEILNEGETIFGTRTNGEYFVRRYEDEEEMGGGFFKTMKEAETEVREYQTEK*
Ga0068471_114689013	F007055	N/A	MIWIAIVMTWNPVIYTIDKEFTSEVDCWNYYDTGVGENKMLNTYGIQVLDHQGNKPDKEYHKKHRPPHREYPIRLYKGVDGWTRGLIWLTCDIKQQ*
Ga0068471_114689015	F008625	AGG	LEEEIAGNRLVWRHIQKENQRMMLDPLGYDPIKDIDEIHSRNRRKTDDPYIKATMKNADYKKWKENTAERR*
Ga0068471_114689017	F020372	N/A	MNIEQKTNKSTIRIYIDGKEMLYSHQNIVAAIHNFLPYLTNDDLDEMKKTLHTLKDHRKQKEYLAKLETLKHSWPYPDTIKQ*
Ga0068471_114689018	F058211	N/A	MIPIENNSWDYVQRLIEREINSAFKLRIKEDNNKMKFKEDHPYMIRLDEVLKQYSVVKVADDNGAHHGADFEEMKQVILDSLFTNYLGNTIRK*
Ga0068471_11468903	F030563	GGA	MWPSTRICSGCLNVFNRAECDIDISDFWNLPEELAWACSTKCANDAKDNWLKPKKMQNNA
Ga0068471_11468905	F002874	GAG	MKEKIDLSLNRSLEELESSYWEFVEATEGEDSSEWSKSVQEDLSALEGYLMKMDLL*
Ga0068471_11468907	F012919	N/A	MKISRKKLNLEILKYLKNGGKITKLPDGPDYRFQPYGVRVTPGDPKVDLTISDTPTTKQQIKYVEKNSL*
Ga0068471_11468909	F007052	GAG	MEKNETYFVARLFKKGEFLSSEIFESLEEARLWAMKEAKLLISDLEMLRSTNVGDICVEIDKHFFGYEISSEELLKNSVRV*