Scaffold Ga0068471_1137146

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1137146
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5482
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F064800	Metagenome	128	Y
F066853	Metagenome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_113714612	F064800	N/A	MGTAMYDALDDMLSLLKTKWGTTTKAGTFPEIKIIWDRKVVGLANYTQDTILLSPKRENIEYFGLYGSDFLHHVDIQIECWTYMNQDRLDDLVKEVTKIIKNNIRRENFVDLIITGSISASDTYRNIWKHILTAKYRKVNP
Ga0068471_11371465	F066853	N/A	MTTITSKRGTSTITDDGLVFGKKSSVLPKNESITVNRGTKVIKTEDIPTQKKVSLKGQTVSVKRGTEVIIL*
Ga0068471_11371469	F005948	N/A	MVELNHNVVSFNSDTIVKGGHGVVVGVFVTKVGTGSNKVEFRNGTTASDPVEFTIFTAAQGTYLGINRRFEDGIFADCAGSAEVTVIFK*