Scaffold Ga0068471_1133864

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1133864
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2413
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → unclassified Nitrosopumilaceae → Nitrosopumilaceae archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005948	Metagenome / Metatranscriptome	385	Y
F062151	Metagenome / Metatranscriptome	131	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_11338642	F005948	GAG	MIPMVELNHNVVSFNSDTLIKGAHGVLVNVYVSKTGSGNNKVEFRNGTTASAPVEFTIFTAAQGTYVGINRRFEAGIFADCDGSAEVTAVFK*
Ga0068471_11338645	F062151	GAG	MGTAIYDAADTVVSLLRDNWTSGRLPNVQKAWDKRSVGFGDSRSPQIILTPKTENITYFGLYGSDFWHDVTIDLDIRSYQNDVRHNNIVKEVNKIIKAKIRGVDDYTDIRIIASYSRSHYMRNMFNHIVSVSRRKLNPS*