Scaffold Ga0068471_1098727

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1098727
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6418
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (76.47%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002348	Metagenome / Metatranscriptome	568	Y
F003122	Metagenome / Metatranscriptome	506	Y
F008155	Metagenome / Metatranscriptome	338	Y
F018198	Metagenome	236	Y
F033080	Metagenome	178	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_109872710	F008155	AGAAG	MTPEHQHLAALVYDIGLKKQIEERVEAKYSKRIEYLVNANNELMYELEQRELELITVESELVTVEKEC*
Ga0068471_109872711	F018198	N/A	MKDKKNLATVRIYIDGKEMLYSHQNIVTAIDSFLPYLTNDDLDDMMKTLSTLKEHRRQKEYLALLEAREKSIQKNRHDT*
Ga0068471_109872713	F002348	GAG	VETKKEKWMKYGGWTLSVIAIISGASFIWPHFHVALLGFALIYLGVRIFNFSTFEEYREKRIKLLHKLMD*
Ga0068471_109872715	F033080	AGGA	MLEYVHRIAEKVANEPLEDELRNWIIGETEDGHMPLVRKPQHVIDEDRGDEIRQMRKEQAQREMYDDPVMNWSGLR*
Ga0068471_10987274	F003122	AGGA	MIELLIFGLVLLSVICLWLMIEGRKSPKFLVWFIPLVLILVSSTYVTYTSILGYPKVEKPKEGLYLKHYIDEPNWIYLWVVYKEKIPISYQLVYSRETHKALEGVKEKSEQEGKFMVLREKEEGVGNKEGKKEQDGGITIGGDISFYEWDYKSNSQEKNPEENR*