Scaffold Ga0068471_1079400

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1079400
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7173
• Total Scaffold Genes: 31
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 27 (87.10%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F026709	Metagenome	197	N
F058216	Metagenome	135	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_107940012	F013700	GAGG	MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGEHMASGGMVRQEFLRRIAQIGYDELKFNDIADTLENDVDENNSHLASKYYEPPETNEEDDEV*
Ga0068471_107940015	F058216	AGGAG	MNKTIGQLIKEDHWSTRRLAVAMRITNKDLKGVKWEKSNKPYKKSKKKSWLW*
Ga0068471_107940016	F026709	GGA	MYIILIKDNHRYRIYTNEIFTTEKETLDYVKRSKFKKDVKWKVEEFDMKYLKS*