Scaffold Ga0068471_1062642

Overview

Basic Information

• Taxon OID: 3300006310
• Scaffold ID: Ga0068471_1062642
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4506
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera gargensis → Candidatus Nitrososphaera gargensis Ga9.2 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040140	Metagenome	162	N
F064796	Metagenome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068471_10626421	F064796	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSITINGLQNGGSAPSIANALGLVNPLEIDVGGIPQIRVRLADMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTAADTTEISITSEYLDGIPRNEALYYSEFSKNTDGVDSSS
Ga0068471_10626426	F040140	GAG	MALKCQALKFKEFGPKHEDTGYDGSLHWKVLHDEVKSIECDFCQQKGIKLMRGLHDSVNIHLGKEVQYPKDMDFLLKHVAWSAEQQGSGLRCFKCQD*