Basic Information | |
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Taxon OID | 3300006310 Open in IMG/M |
Scaffold ID | Ga0068471_1054950 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6038 |
Total Scaffold Genes | 18 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (44.44%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
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Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F066855 | Metagenome | 126 | N |
F090508 | Metagenome | 108 | N |
F097513 | Metagenome | 104 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0068471_105495012 | F066855 | GAGG | LKIFTKSRVANFCAGTVILFTAYAVVFQEIQTEMLVILSGLSGFSAKFLWDSTSDQLDK* |
Ga0068471_105495014 | F090508 | N/A | MKYKANWIKTEKGNGIKTGNTITVKVIDAITVSGWIARKSWHGRKIMQVAQGKSLVSFKLKEKKRKKTVPYKTGRYILKISATGKNNKSNTWTDEFEVI* |
Ga0068471_10549509 | F097513 | N/A | MTSDKWRIISLDWDKFTWHKAYKIIKFIFNDRKDIKKIKVYSSPNLDGYHIYIYFDKWLLWHEVLQLRRKYQDDSKRLINEFFKVNPEEKMILFQNKNGKKESFMYEFWPSRFEMPNHVGT* |
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