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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300006310 Open in IMG/M |
| Scaffold ID | Ga0068471_1054438 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_3_0500m |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | University of Hawaii |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5934 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (63.64%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Pacific Ocean | |||||||
| Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F047308 | Metagenome / Metatranscriptome | 150 | N |
| F065858 | Metagenome | 127 | Y |
| F066859 | Metagenome / Metatranscriptome | 126 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0068471_10544381 | F047308 | N/A | AGDDQEWIVNQIVYPCWFPPSRAEATSSATYAAVTAADTTEISITIEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDVMAGVDSSTIRTVQMQQVPFRGR* |
| Ga0068471_10544382 | F066859 | AGGA | MVHELPDENGRVQTQINTSRAGYFVSNFDTTESVTVTPQGGGTIDIVLPPGAKIGIPDKIGLVAQGSNSSRNYIFLMWTAGYAN* |
| Ga0068471_10544387 | F065858 | AGCAGG | MNEIQLKTFSDNLPSQTITKNQLEKIESRLPELHRAKAIIGHSTSQASYALQTLNMLDDSPMSRMKQCLSNIEHKYQAVREAYFNIEKKKLEIKDLKNNKDELSRLKIRENETSIESIQNSMGNALREIGMFQDFYENIRKANNIPLQWNEHDFEKQEIANMVRKSFRLGIQTISNSHSVSIAAVEFWEQLGIHPQSAEAHCRNYLNQVQKIISDGKEPDIRVMYEFLDGMAEKFKDSYKFALDRIGLKELGSEDFRL* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |