Scaffold Ga0068470_1573533

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1573533
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1106
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005464	Metagenome / Metatranscriptome	400	Y
F008155	Metagenome / Metatranscriptome	338	Y
F025386	Metagenome / Metatranscriptome	202	Y
F027016	Metagenome / Metatranscriptome	196	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_15735332	F008155	N/A	MKNKKDTQQLATLVYVLAMRKEIEKEVESRYTKRIDYLVNANNELMKELEQCELECYGRGYEETTTTG*
Ga0068470_15735333	F025386	AGGA	METSFETETKNTTANTWAGFWFLIFFTSLIVAVWGEPDLIDALIYYLSDGYYK*
Ga0068470_15735334	F027016	N/A	MVKTMEELEEAEALLLNREMLTEVKNLIDDINDTKPSHLRQFIHPQWGSILGSEEDIRLATLKDEVEIWEQRVGKNPDTIPYLGYIRDTLKGRIKELKGL*
Ga0068470_15735335	F005464	N/A	FFNLKRKVQRTMKFRDKEDILRLVGWTLSLLCMIIGSYFVWPHIHVALLGLAFFYLALRIFNFSTFEEYKEDRVKLLLKLSKW*