Basic Information | |
---|---|
Taxon OID | 3300006308 Open in IMG/M |
Scaffold ID | Ga0068470_1435330 Open in IMG/M |
Source Dataset Name | Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | University of Hawaii |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 1198 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
Associated Families | 4 |
Taxonomy | |
---|---|
All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Pacific Ocean | |||||||
Coordinates | Lat. (o) | 22.75 | Long. (o) | -158.0 | Alt. (m) | Depth (m) | 500 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005464 | Metagenome / Metatranscriptome | 400 | Y |
F014792 | Metagenome | 260 | Y |
F025858 | Metagenome / Metatranscriptome | 200 | Y |
F101872 | Metagenome | 102 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0068470_14353301 | F014792 | N/A | MRNNERENYSWGIIQDMIEREVSSAFKLREPIKMPSKKEIKQIIKSTVKKERK* |
Ga0068470_14353303 | F101872 | GAG | MDTLKQIIQDIKISNSLQGQANIGSLANSHGLSEEDIRILTFASKPINENVKHEELQFDQNVFKKPSIYETLG* |
Ga0068470_14353304 | F025858 | AGGAG | MLNSYGTQVLDHQGNKPDEDYMKKHRPAHRVYPTRMYKNNGDWMVWLTCDIKGRNEGL* |
Ga0068470_14353305 | F005464 | AGGA | MNIRNKDNTLRMVGWALSLLCMLIGSYFVWPHIHVALLGLAFFYLALRIFNFSTFEEYKEDRVKLLLKLSKW* |
⦗Top⦘ |