Scaffold Ga0068470_1230265

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1230265
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1815
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (50.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034956	Metagenome / Metatranscriptome	173	Y
F035335	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_12302654	F035335	N/A	MNIDAKFFGILIFLVSQTAAGIWWAASLSSEVERLAGIQGTSIPSIEKAIEGLDVMGFRVEQLSKELERINDRNDAIENQHSRLFEALQGNQIQQSSKGYGGYD*
Ga0068470_12302655	F034956	GGA	MVHIQMKCTHLQIVKQSYGNHLRFTLQLCFDFLLLAVVSVVHGLCPWILTGKVSDRVKELNVILNERWLNPK*