Scaffold Ga0068470_1184311

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1184311
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1842
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014154	Metagenome / Metatranscriptome	265	Y
F054103	Metagenome / Metatranscriptome	140	Y
F064802	Metagenome / Metatranscriptome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_11843111	F014154	N/A	MVEDLFKIEAVGNKNLVKENKHKTISPFNSAKHLKTANVPALCDQCVYRSIEDGGNGKCPKYEAGAVCAIRDEFINLINTLDTRNPEDLKSMMDMLAKLSFENVLMALTQAKMDGNIPDRNTKSEVN
Ga0068470_11843112	F054103	N/A	MKIYFNANNKATLEALERCGVRNVLLSHRYSYANINKFKSRFDSIFIVPGTKGNPDKYHEFLKKKREYYDYATQFDVFYNMDETLKYLEKEREDGIDWTLPILQENYLQHISRLRPKTGDYICIGEVHGKLETEDQIRKLPQNVEYHGLAKGKYIEKRPFKSLDTSGWISAAMSKKTEVWSGNSTFSLFFGEKGRGMKAQVASTLERFSEYLEIAGISSKSVLENDYYSLLKLPIAVLYMPMCKSLGIYDINFK*
Ga0068470_11843113	F064802	N/A	MQQPVLQMNVRHMKTEESIRDLILFQKEKLLHEKVDDQCMLPQTLIPPLLIDIPDEERRGIIRALRWVLSDEDIFQRE*