Scaffold Ga0068470_1177869

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1177869
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2410
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (33.33%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001235	Metagenome / Metatranscriptome	741	Y
F051977	Metagenome / Metatranscriptome	143	Y
F097505	Metagenome / Metatranscriptome	104	N
F105353	Metagenome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_11778692	F001235	GAG	MGTKLNVDPGSDIGKKLWEVHQKDEYTHVDHYKEAICINCFKKDAASATIADICSECAGKRGREPLLATICQKMYGLCFFCGKYKFEIEQINARFCRKCHRRIANVTKEYNKKGGPVGMDPFWLAMRKKHGKDWKIIMSQNLGNKR*
Ga0068470_11778693	F097505	AGGA	MDWKRARKRMHCDCSIHDVVSSVLEYFIITPMFATAYLAVTVPWMLFVIKLDGEQFTDFIWQSVLVDLIVAYPVTKLILKLKPRIEKLTSLRH*
Ga0068470_11778695	F051977	N/A	MEAFINKVCADFVMGTSIYVYETEEEYRKIYHRIDKEVMHSAPILDIFMKEDKKLWVVTKITKNKERPQLGRSIVHFINGTVFEYSDGKERPILKNSVVFNSKKGRVEFFPKKLRDPELWIKVDRFYGMPPKGKVILDQSKRFYDVSRDRLNFIVKNKDGL*
Ga0068470_11778696	F105353	AGG	MKRYGYEDGMHEVWLCYKCGKFIGTAGGDVFFSMMAKEHPELILTMVQEKILTPITTKKNGINRRNKTFGR*