Scaffold Ga0068470_1157351

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0068470_1157351

Scaffold Ga0068470_1157351

Overview

Basic Information
Taxon OID	3300006308 Open in IMG/M
Scaffold ID	Ga0068470_1157351 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2200
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)		Depth (m)	500
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F012510	Metagenome	280	Y
F034603	Metagenome	174	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_11573512	F012510	AGG	MKTFKSFYDWGKSLNEVYKDYPGKGWVHGTKDAPKINPKDIVWRSKVHHWDNTVRSDDTRMIITNTGKGKDKFQMWAVSDKSGDVVFHFGDKPTLDDAKEFASIRKWQEKK*
Ga0068470_11573513	F001930	AGGA	MKTFKGYLKEDAPAWQSSTSQKIFDFGQISYMQIPLTSSTMEWIFQVQLPRATVFHVTNGIGLDKLKKLQNKKKSISAFFNMDASTMESGIQGGGGLVVELDANIIMSSKGDLMSMPDKTGRRWVELYNIDPKEKMHAELEKMLIDLAIKHDPKNKEYLKTVPEIGIGVWYKLQTDLLTKFDPAKAGKKMALIIADYIDGVNTILKKHKKDIQGAIHGYIVRRGTVAVKHPSGRMVGGDSEISEWNAWDEQVVDKIKIEKVHTFNTARREADWVKDSVIPILGKIPHKHWKSAAELSTYISQVADAEVRTFGGWARKK*
Ga0068470_11573514	F034603	N/A	PLSPSIFKRIWPKPPRTTIFHLTDYAGVKKLKGLQGGKKSISAFFNITARAIDDGVATSGGYAVELIGDILAAAPDDLSTQPDKTGRRWITLSTLLNPIDFSHFGDGIGGGKALKGMENDINEMMIEIIMQYADDPQYMPNVNKSWIALRQEYLNEKKILSLIIKDYIDGMEKVMKSYSKPLKSIFTDYAFNKELVPDPDSGDLALWDEIVVNNFKVKKVHVSAEFSPDFEGDDDPLTNSDFGWNVPFELYHDDGDMADYIARTRN*

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