Scaffold Ga0068470_1129297

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1129297
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2255
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007055	Metagenome / Metatranscriptome	359	Y
F007771	Metagenome / Metatranscriptome	345	Y
F010477	Metagenome / Metatranscriptome	303	Y
F026902	Metagenome	196	Y
F069325	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_11292974	F026902	N/A	MDRYRIEYAEKGVPGLLYKNATGAEELLEVLLRLKYFGKLKSFDSVKIYSKKH*
Ga0068470_11292975	F007771	N/A	METIIHAKTIDKKVRLALYGMLHHSATKLFPRRMKYVSIKLHLKHYVYDGVAMIEEDTKITNPRNFKIVIDPYRLEKDDWGRERNYSEWVSELLRTLAHEMVHVKQYIMGELTFKKGQMCWKKQKVDFKSGEDYYFSPHEVEAYGLEKGLQLGYTATWNKIETEKENG*
Ga0068470_11292976	F010477	GGA	MKIRYLVFVPYLIFIGVMGGNVLAEAIVVGICLGTYDLLFGNGGGGRPA*
Ga0068470_11292977	F069325	AGG	MSICSNCYKSQISIKHDVGHWWNNPPDHVYVCSDKCYKELEQHVKNKTWMLHRPVAMFGKSKKVTKGLTALTDKQFGT*
Ga0068470_11292978	F007055	N/A	MIWIAIVMTWNPVIYTIDKEFSSEVACWNYYDTGVGESEMRSRYGTQVLDHQGNKPDKEYMKKHRPAHREYPTRLYKNHGAGLVWLTCDIKGRYEGL*