Scaffold Ga0068470_1110268

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1110268
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6097
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (75.00%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. TMED197 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F026709	Metagenome	197	N
F032813	Metagenome	179	N
F040683	Metagenome	161	Y
F043453	Metagenome	156	N
F055789	Metagenome	138	N
F058216	Metagenome	135	Y
F061266	Metagenome / Metatranscriptome	132	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_111026812	F013700	GAG	MDFKNLAYPFEEVGDAPFNVVRILNECYNDYSNGNLGDGEHMASGGMVRQEFLRRIAQIGYDELKFQDIADTLENDVDENNSHLVSKYYEPPETNEDDE*
Ga0068470_111026815	F040683	GGAGG	MKKYRVWGYETQGYYTEVEANNKQDAHDKAMDVDREDWDEGNDGECSSFDIELKDIERIEDES*
Ga0068470_111026819	F061266	N/A	MFGTKKEEEQKLKRFMVMCKSKTGTTFYHEKSFFTLADADAYANLVRRQEDEQGNHFYLFEQSKHYGNGEDKK*
Ga0068470_111026820	F055789	N/A	MSDPYLEKIAQEKHLHECEKEIADAKKEIFTLKQEIIHLKAEVKYERELRIHGADYHKPKDYHSRLRQMIEIVKKDTKLTDIHDIVDEAQRRLVRE*
Ga0068470_111026823	F032813	AGGAGG	MKTNEEGHVWLEKSQAYICPSYLNKTCTDFSDTDSEWLYNLYQKHFPNAKVNGIKSQIKDEIFNLIAKDNYKKKNLIKALRNKFPDIKSGVICRILKKYLSLRVLEIDRTYKTKPFVIKGKYCIN*
Ga0068470_11102684	F043453	AGGAGG	MSEQIKIVVDRKNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLSKLFDINLKEQEVF*
Ga0068470_11102686	F026709	GGA	MYIILIKDNHRYRIYTNEIFTTEKETLDYVKRSKFKKNVKWKVEEFDSKYFRGGE*
Ga0068470_11102689	F058216	GGAG	MNKTIAQLVKDKHWSVQGLVKSINITKEDIQKWEKLNKPYKKSKKKSYLW*