Scaffold Ga0068470_1099676

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1099676
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2739
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (91.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013700	Metagenome	269	Y
F043453	Metagenome	156	N
F058216	Metagenome	135	Y
F096041	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_109967611	F096041	AGGAGG	MNKNKEYIYITRTMKINVPAIYCQDAIDKIELIKKKDLIPKELGTLYTRCRVRDRGRDKYGL*
Ga0068470_109967612	F013700	GAG	MDFKNLAYPFEDVGDAPFNVVRILNECYNDYSNGNLGDGERMADGGMVRQEFLRRIAQIGYDELKFNDIADKLEEDVDENNSHLYSKYYEPNETNEEDE*
Ga0068470_10996765	F043453	AGGAGG	MSEQIRIVVDRQNKHGTDFYYPVCELSQTLVKLKGNTKKVLTKSDMFLLSKQFDINLKEQKNIWKE*
Ga0068470_10996769	F058216	AGGAGG	MNKTIGQLIKEDHWSTRRLAVSLNITKEYLKGVKWEKSNKPYKKSKKKSWLW*