Scaffold Ga0068470_1015453

Overview

Basic Information

• Taxon OID: 3300006308
• Scaffold ID: Ga0068470_1015453
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_2_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2235
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033842	Metagenome / Metatranscriptome	176	N
F066859	Metagenome / Metatranscriptome	126	N
F078831	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068470_10154532	F033842	AGGA	MSQEAKKMKLETLLKPSKLIDKAKLGMKGAAGFAAATVALEAGTQLLERFVFDRYLPQAANLMNTVITTSAPALGTIDVRDAIVLLPAEQQAYKALSSGNKQAHIINALASYGTKVILRRTGLNPKEIADKTEKIIAQPMRLPSVM*
Ga0068470_10154533	F078831	GAG	MVQTNESIYGKHRAFTSSQQNLVLPGAKSKYLEAVSITINGLQNGGSAPSIANALGLVNPLEIDVGGIPQIRVRLADMYAIDMLWLQHNPLTKISAGDDQEWIVNQIVYPCWFPPSRAEATLSATYAAVTAADTTEISITSEYLDGIPRNEALYYSEFSKNTDGVDSSSFGNWTQTTNLVGNMTGMLFNSPTIPGGSTLMEDGTIQQVRIQGNGNTLLVYEWAEIQNPGIFNGQMFNSLEESPANTSILDNYRWLSLAKEPIPAGTRVQTDVMAGVDSSTIRTVQMQQVPFRGR*
Ga0068470_10154534	F066859	GAGG	MVHELPDENGRVQTQINTSRAGYFVSNFDTTESVTVTPQGGGTIDIVLPPGAKIGIPDKIGLVAQGSNSSRNY