Scaffold Ga0068469_1162452

Overview

Basic Information

• Taxon OID: 3300006306
• Scaffold ID: Ga0068469_1162452
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1636
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001625	Metagenome / Metatranscriptome	661	Y
F005948	Metagenome / Metatranscriptome	385	Y
F064804	Metagenome	128	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068469_11624522	F064804	N/A	MVQLYHNEKLAKARDLVIIFLFGSILIETITGIELLGTWWK*
Ga0068469_11624523	F001625	N/A	MALTISTADWTSANVRKTLSVQAALVSKLRIYSIKVTFGASDAYATNGVSADLKEGRISTLVAVSPTFTDSKLVVQYDKTNEKIKCFTGSGNGNVLAEVPNASALVNSKIFEFLVIGY*
Ga0068469_11624524	F005948	N/A	MVELNHNVVSFNSDTLVKGGHGVVVAVFVTKVGSGSNKVDFRNGTSTSAPGEFTIFTAAQGNYQEINRRFENGIFADCTGSAEVTVIFK*