Scaffold Ga0068469_1071648

Overview

Basic Information

• Taxon OID: 3300006306
• Scaffold ID: Ga0068469_1071648
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0500m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6160
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 500

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001930	Metagenome	615	Y
F012510	Metagenome	280	Y
F016590	Metagenome	246	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068469_10716485	F016590	GAG	MKSFKGYLTEFAQLSTSDYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHATDHNGLGRIKKLEGGKKSISAFFSMMSRYMEGGIATEGGIVAEMDADVLISAKDDIMSMVDKTGRRWVEMSWFVNAQSYGTGPKFGKVEKELNTLIANLVVKHLPKDVTQGEHEYELWSDMKRHLHGDGKKLRLVIKDYFDGVEKVIKKNKEVMSGIFYGYAKSKRMTDNAWDEQIVNNIKIKKVHLIKPRQSKVDTANPDRTHPIDSFQIAKEAAEKLFDTVKVWDASIELEIYTREVVAKERGK*
Ga0068469_10716486	F012510	AGGA	MKTFKEHLNEVYKDYPGKGWVHGTKDAPKINPKDIVWRSKVHHWDNTVRSDDTRMIITNTGKGKDKFQMWAVSDKSGDVVFHFGDKPTLDDAKEFASIRRWQEKK*
Ga0068469_10716487	F001930	AGGA	MKRFKQYLKEGVAWELSASKMIFDFQNVPDMKIPFTSKTMEWIFKVQLPRATVFHVTSGIGLEKLKKLQNKKKSISAFFNMTADYIDSGIKTEGGVVVEMDANIIISSKSDIMSQPDKTGRRWVALYNIDPKYKMEKEMTQMLIDLAVKHDPRNKEYLKTSPEIGVGVWWKLQSDLQTNFAKDKAGKKLSLIIADYIDGVNAILKKHKKDIQGVVHGYYVRRGAVAVKHPSGRMVGGDSAIKEWNVYDEQVVDKIKIIKVHTFNTTTRETDWLAKSVIPRLGKIPHRHWVGGATELSTYVSQVAEAEVRSIGRSKP*