Scaffold Ga0068468_1117613

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1117613
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2375
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_111761310	F001993	N/A	MNSEELRYKMKHLGVLCPDRSVANDEQFYELYSKFKDVIEDTEYNIDIVDCLTALHCAMEDFEMYA*
Ga0068468_11176138	F004453	N/A	MLIDFTEFELETIANAMEDYIQYDDEKLDTESLFGGLSVADRVTSINNKIDSVLYN*
Ga0068468_11176139	F014388	AGGAG	MSSLHHENILEDCFEVAMESFRINNQLTHKQLDELITISKGTYDAICSNAYKIFQDRCQ*