Scaffold Ga0068468_1109964

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1109964
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8829
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (58.62%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004764	Metagenome / Metatranscriptome	424	Y
F013648	Metagenome / Metatranscriptome	269	Y
F014388	Metagenome / Metatranscriptome	263	N
F023880	Metagenome / Metatranscriptome	208	Y
F054943	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_110996415	F004764	GGAGG	MNFSLEQNVDILSAYHVERFTHLRDNKQYQDADAIAQEYICNGEVEDDNYQWLYVNYQFEEAN*
Ga0068468_110996426	F013648	N/A	MDKTKEECITLIENYYCQRLTELVDLKMYDEAHAIFEEFSLGDDESYQWFFVKILEDTTNE*
Ga0068468_110996428	F054943	AGGAG	MKHLIPFTKDQLQIVQASLQLSLKYADSQYVDNVDEIMQIIEDNSSL*
Ga0068468_11099643	F023880	N/A	MNKEHTYAAQMELTNVPEDSLKEWSNMPPISDELYAELVREFNNERQYFFNDSYNLED*
Ga0068468_11099648	F001993	GGA	MNAEQLRYKMKHLDELCPNRSVTNPEEFHALYSKFSWIIEQTDYKIDIVDCLTALHCAMEDFEMYA*
Ga0068468_11099649	F014388	GAGG	MSSLHHENILEDCFEVAMESFRINNKLTHEQLDELITISKGTYDAICSNAYKIFQDRCQ*