Scaffold Ga0068468_1070488

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1070488
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1990
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003869	Metagenome / Metatranscriptome	464	Y
F007173	Metagenome / Metatranscriptome	356	Y
F018383	Metagenome / Metatranscriptome	235	Y
F029129	Metagenome / Metatranscriptome	189	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10704881	F029129	N/A	IKVNKYGDKLHSLIDDLGWEYQRMGMSGRETYDEICHLLNMIPEDEVYMEI*
Ga0068468_10704884	F007173	AGGAG	MQTITKAKISRNNLMEYIHEDRDLLMGLQDDLSDMLYATGKFSIDLNEIVNEYMPYIPLYLIENEDEIKEVYSDRIDDDDNLFIFDRDKTPTSINLYVEWLD*
Ga0068468_10704886	F003869	GGAGG	MAKRQYKRTHFYSIGSMMTDEEVHQVWEIVGNALDRNGFVDADGELSIRVYDETLKKNVKIIPQ*
Ga0068468_10704888	F018383	AGGAG	MEKLTFNNEQLEFLKFIVQDFEYNDDHEKYMIEQIENKIYQAQENQMLRVIGGLTT*