Scaffold Ga0068468_1069482

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1069482
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7932
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004764	Metagenome / Metatranscriptome	424	Y
F013648	Metagenome / Metatranscriptome	269	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_106948217	F004764	GAGG	MNFSLEQNVDILSAYHVERFTHLRDNEQYQDADAIAQEYICNGEVENDNYQWLYVNYQFEEAN*
Ga0068468_106948223	F014388	GGAG	MSSLHHENILEDCFEIAMESFRINNQLTHKQLDELITISKGTYDAICSNAYKIFQDRCI*
Ga0068468_10694825	F013648	N/A	MDKAKEECITQIENHYCQRLTELVDLKMFDEAHAIFEEFSLGDDESYQWFFIQLLEDTTNE*