Scaffold Ga0068468

Basic Information
Taxon OID	3300006305 Open in IMG/M
Scaffold ID	Ga0068468_1065286 Open in IMG/M
Source Dataset Name	Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	University of Hawaii
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300006305 Open in IMG/M

Scaffold ID

Ga0068468_1065286 Open in IMG/M

Source Dataset Name

Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

University of Hawaii

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4472
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (81.25%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

4472

Total Scaffold Genes

16 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (81.25%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location
Location Name	Pacific Ocean
Coordinates	Lat. (^o)	22.75	Long. (^o)	-158.0	Alt. (m)	Depth (m)	25
Location on Map

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Source Dataset Sampling Location

Location Name

Pacific Ocean

Coordinates

Lat. (^o)

22.75

Long. (^o)

-158.0

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F005533	Metagenome / Metatranscriptome	397	Y
F007173	Metagenome / Metatranscriptome	356	Y
F012353	Metagenome / Metatranscriptome	281	N
F021120	Metagenome / Metatranscriptome	220	N
F049702	Metagenome / Metatranscriptome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_106528611	F021120	GGA	MKVFTIQFTEDELTELENVLDQHVYAEAIENKGSEGTIGRVHNRILDVHYQNSDGLVPVVKATHKHFRKDLDLL*
Ga0068468_106528615	F012353	N/A	MKLMLYTTGEWKVDPNKDITFPLVRWLFKLFPVLNDSEIEINQVDLGDEFALGFCQQDDGEFLIHVHNRMDLREYVKTLIHEITHVRQTLDGITDSNAREDEAYHLEETLSKEFWDSYISGTQ*
Ga0068468_10652863	F049702	GAG	MTLIDFNKKELHDIYSALQYSRLEIGFESKSEEELYDRLTKLMDKVAKLRQVCDCQEK*
Ga0068468_10652865	F001504	GGAG	MTQDTEHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVQNAELSIRLYDPELTENKGYYNQPEPINYYQGA*
Ga0068468_10652866	F007173	GAG	MQTTTTKAIISRDKLMEYIHEERDLLMGLQDDLSDMLSATGRYSITLDEIVQNYMPFIPLHLIENEDEIKQAYPDRVTDDEYIFIYDRDMTPNEITLNVEWLD*
Ga0068468_10652868	F005533	AGG	MDYTQNETALLTLISNINNQFYYIGEEDDKVAPIDVKKFTEHCVAFIDSLEIEQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0068468_1065286

Overview

Ecosystem & Geography

Associated Families

Sequences