Scaffold Ga0068468_1062950

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1062950
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1385
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F009691	Metagenome / Metatranscriptome	314	Y
F013094	Metagenome / Metatranscriptome	274	Y
F018383	Metagenome / Metatranscriptome	235	Y
F054943	Metagenome / Metatranscriptome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10629502	F054943	N/A	MKHFIPLTPNQLSIVESSLQSSLKYSDSEYIEQVDEILQVIEENS*
Ga0068468_10629504	F009691	AGGAG	MKSTLNSKDYVTFARRFVKETVETMDIDEIRNIVTDYIHDEIQEKEDTFGQEGAFEEMMAWSEDVFLSVAEDFDLEFEGA*
Ga0068468_10629505	F013094	GAGG	MIIGFFTGVIVAIPTSLVAMKLLNSSLFIDNQELRHINEKVSILINQLDDYREERLADKFSIEKGNIKLETTD*
Ga0068468_10629506	F018383	GGAG	MEKITFNNEQLEFLKFIVQDFEYNDDHEKYMIEQIENKIYQAQENQALRVLHGIK*