Scaffold Ga0068468_1048375

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1048375
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6663
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 16 (69.57%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F001504	Metagenome / Metatranscriptome	681	Y
F007173	Metagenome / Metatranscriptome	356	Y
F014025	Metagenome / Metatranscriptome	266	Y
F023367	Metagenome / Metatranscriptome	210	N
F028529	Metagenome / Metatranscriptome	191	N
F029472	Metagenome / Metatranscriptome	188	N
F036278	Metagenome	170	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_104837510	F001504	GGA	MTCNTEHFYAVQSFLEDDELHKIWNIIEIAMEREGYDVQNAELSMRLYDPELTETIGFYNK*
Ga0068468_104837511	F007173	GAGG	MQTTTTKAIISRDKIMEYIHEERDLLMGLQDDLSDMLYATGKFSITLDEVVQNHMPYIPLYLIQNEDEIKKAFPDRITDNEYIFIYDRGMTPNEITLNVEWID*
Ga0068468_104837514	F028529	GGGGG	MRLSKFLTENLEEKTVNLTLTFDERSELLKHLEMFDEHIDQLHPLVESVQDKLLGID*
Ga0068468_104837516	F014025	GGA	MKLDNYDLSTIHYALYYYMDNADLDEDEMEWIGLLREKVDSIMVSQINYDKECG*
Ga0068468_104837517	F001026	GAGG	MKHTIELDDLELTALITHLEGQNEIMSESRLNCSNPSETPDREEVLLNKVYEKAFTIGWDADKNPNNDFDLIKNQDRIYQYKMYPQVYGQMP*
Ga0068468_104837522	F036278	GAGG	MTDTRGYQPEGVKYTFPDDDPYQEGNEVYYNMVDFLDDSEVHQIWEIVGKALDRNNIVTSDNESLSVRVYDELSDED*
Ga0068468_10483753	F029472	AGG	MLSRKTIENLTDKLMVGVANYVTEDPRFTELLNELVPEAIDLELGQVDDYSVVQIITEIQQHLRCSPNHSQVHYPRCPL*
Ga0068468_10483755	F023367	AGGAGG	MAMEESKVTKMKKFIFEEKFISYADVEIYAENEEDARRQFQNGNYQYYDVSDFTDGHELINVREETE*