Scaffold Ga0068468_1042439

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1042439
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4829
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 11 (61.11%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001993	Metagenome / Metatranscriptome	607	Y
F004453	Metagenome	437	Y
F004764	Metagenome / Metatranscriptome	424	Y
F014388	Metagenome / Metatranscriptome	263	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_104243910	F004764	GGAGG	MNFSLEQNVDILSAYHVERFTYLRDNEQYQDADAIAQEYICNGEVEDDNYQWLYVNYQFKESI*
Ga0068468_104243914	F004453	N/A	MLIDFTEFELETIANAMEDYIQYDDEKLDTESLFGGLSVADRVTSINNKIDSILYN*
Ga0068468_104243915	F014388	AGGAG	MSSLHHENILEDCFEVAMESFRINNQLTHEQLDELITISKGTYDAICSNAYKLFQDRCI*
Ga0068468_104243916	F001993	N/A	MNAEQLRYKMKNLNELCPNRSVTNDDEFYELYSKFRDLIEDTNYNIDIVDCLTALHCAMEDYEMYA*