Scaffold Ga0068468_1037560

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1037560
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3110
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (76.92%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001504	Metagenome / Metatranscriptome	681	Y
F012353	Metagenome / Metatranscriptome	281	N
F021120	Metagenome / Metatranscriptome	220	N
F034958	Metagenome / Metatranscriptome	173	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10375601	F012353	N/A	MTLYTSGDWKVDPNKDITFPLVDWIVKLFPVIKDKEIEINQVDLDGEFAMGFCQDNDGEFLIHVHNGLDIREYVKTLIHEFTHVRQTIDGITDANAREDEAYYLEEQLSKAFWDSNISGTQDVDL*
Ga0068468_103756010	F001504	GAGG	MTYDSEYYYAVQTFLKDDELHEIWNIVEKALNRQGYDVSNSELSLRLYDQELEDNIEYDMEHLL*
Ga0068468_10375602	F034958	AGGAG	MKSEVDQMIDNLKFCIETIGLNDEQTGEVLAATNELGVNVEYFCNEFMESSSKEVHESDYLNIALFNAMYWEF*
Ga0068468_10375605	F021120	AGGGGG	MKVFTIQFTEDELTELENVLDQHVYAEVIENKGGEGIIGKVHNRILDVHYQNSDGIVPVQEVAHRHFRKDLDLL*