Scaffold Ga0068468_1027080

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1027080
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7046
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (42.11%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023367	Metagenome / Metatranscriptome	210	N
F060048	Metagenome	133	N
F095621	Metagenome / Metatranscriptome	105	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10270801	F060048	GGAGG	MNPTLEQNVDTFSNHYVERFKFLLEGEMLNLQVKRHKDANSIMQEYLCNDGEVE
Ga0068468_102708014	F095621	N/A	MIFVSRTLLYIIMDKDKEECITQIENHYCQRLTELVDIKMYDEAHAIFEEFSLGDNESYQWFFIKFEDDDSETLSIEDETNR*
Ga0068468_10270804	F023367	N/A	MKKFIFEEKFTSYANVEIYAENEEDARLQFQNGNYQYYDISDFTDGHELIGVTEEICDS*