Scaffold Ga0068468_1023321

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1023321
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3933
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004869	Metagenome / Metatranscriptome	420	Y
F005533	Metagenome / Metatranscriptome	397	Y
F009691	Metagenome / Metatranscriptome	314	Y
F018383	Metagenome / Metatranscriptome	235	Y
F029129	Metagenome / Metatranscriptome	189	Y
F040144	Metagenome	162	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_102332110	F029129	GGAG	MTKKTETKKFIIEIVGEKVKVNKYGDKLHSLIDDLGWEYQRMGMSGRETYDEICHLLNMIPEDEVYMEI*
Ga0068468_102332111	F005533	GGGGG	MSYTKNEIALETFISNTNNQFYYIGEEDDKVAPIDVKKFTEYCVAFIDSLEIEND*
Ga0068468_10233215	F018383	GAGG	MEKITFNNEQLEFLKFMVQDFEYNDDHEKYIIEQIENKIYQAQENQALRVLHGL*
Ga0068468_10233216	F009691	AGGA	MKTELNSKEYVTFARRFVKETVATMDIEELRGIVTDRIHEEIQDGENNFGQEGAFEEMMAWSEDVFLSVAKDFDLEFEGA*
Ga0068468_10233217	F040144	N/A	MKPQLHEFYVTRKCTKMEYFTVKAESLEEAKYEAENGYDYYDFDWEEFDYETVNIEEQEIPEQQLTLASVGLVVL*
Ga0068468_10233219	F004869	GGAG	MSYDTEHYYALHTFLEDDELHNIWNIVEKAMNRHGYDVSNSELSMRLYDQELEENIEHDYMAEYLDSLSEGKDYGSKVDALVDSMGVTEKEVSTTHRRKDMDLL*