Scaffold Ga0068468_1021043

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1021043
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3801
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F005533	Metagenome / Metatranscriptome	397	Y
F013094	Metagenome / Metatranscriptome	274	Y
F029784	Metagenome / Metatranscriptome	187	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_102104310	F029784	AGGAGG	MCSQIYAHPVEGYKCFANANKSLGTYYTCCDLDTREIRYVTYIYDGYFMGYYLVQSATKVAENFANCQEKIFLSSASNKWPYYKGNDNEYTIDRQYPMQYDIPSLDEVEYSYLDSLLTAGTSK*
Ga0068468_102104313	F005533	AGGAG	MSYTKNEVALETLISNINNQFYYIGEENDQVAPIDVKKFTEHCVAFIDSLEIEK*
Ga0068468_10210433	F013094	N/A	MISAFFTGVVVAIPTSLVMMKLLNSSLFINNSELLDMNQKISVIIHQLDDYREERREEREKFLNVSKDTK*
Ga0068468_10210434	F001026	GGAG	MTHTLKLNDLELTALITHLEGQNEMMCESRLNCSNPSETPDIKEVLLNRIYEKAFTIGWDADRNPKVNFDLIKNQDKIYKY*