Scaffold Ga0068468_1019412

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1019412
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3825
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001026	Metagenome / Metatranscriptome	802	Y
F014025	Metagenome / Metatranscriptome	266	Y
F061924	Metagenome / Metatranscriptome	131	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_10194122	F061924	GGA	MNFKITLSDTEIVSLVNFIEYWNDVQQADQDLLDNIAKKLDNTIIRHREKVIKAQSKRPKEEW*
Ga0068468_10194125	F001026	AGGAG	MKHTIELDDMELTALMTHLEGQSEIMNESRLNSSDPHTPDREEILLNLVYAKVFTLAYELDKDQNVDYDLMQNYNRIYDYKLYPQVYGQTK*
Ga0068468_10194126	F014025	GGA	MKQLDNYELSSIHYTLFYYMDNANLDEDEMEWIGLLRDKVESIMQMQLQYDMETV*