Scaffold Ga0068468_1018552

Overview

Basic Information

• Taxon OID: 3300006305
• Scaffold ID: Ga0068468_1018552
• Source Dataset Name: Marine microbial communities from North Pacific Subtropical Gyre, Station ALOHA - HOT229_1_0025m
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: University of Hawaii
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6578
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 23 (88.46%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Photic Zone → Marine → Marine Microbial Communities From The North Pacific Subtropical Gyre, Aloha Station

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 22.75
  • Long. (^o): -158.0
  • Depth (m): 25

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003869	Metagenome / Metatranscriptome	464	Y
F013094	Metagenome / Metatranscriptome	274	Y
F018383	Metagenome / Metatranscriptome	235	Y
F030123	Metagenome / Metatranscriptome	186	N
F084358	Metagenome	112	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0068468_101855211	F013094	AGGAG	MITGFITGVLVAIPTSLVAMKLLNSSLFIDNQELRHINEKVSILIHQLDDYREERLAEKEEVK*
Ga0068468_101855212	F018383	AGGAGG	MEKITFNNEQLEFLKFIVQDFEYNDDHERYMIEQIENKIYQAQENQALKLLTGLN*
Ga0068468_101855213	F084358	AGGA	MTLIDFDKKELLDISHALLSYRTDSTVIREGGLTDEQKERYKRLTSLIEKVSQLRNVCDCGGKTN*
Ga0068468_10185525	F003869	N/A	MAKKQYKRTYHYSIAGMLTDEEVHKVWEIVGNALDRNGFTDADGELSIRVYDETLKKNVRIIPEVN*
Ga0068468_10185527	F030123	AGGAGG	MSAISTDGMDKWIDDAYPDLDRRKANMIYEIASLIKDDPDTAPVLIEELVDIMFDEQIDHLEDVIVNHFGVEVYPE*